| N_sites | N_counts | N_detections | rep_period | iterations | burnin | thin |
|---|---|---|---|---|---|---|
| 127 | 137 | 59 | 7 days | 120000 | 20000 | 10 |
| Yr | 2016 | 2017 | 2018 | 2019 | 2020 |
| sites | 19 | 31 | 19 | 32 | 26 |
| detections | 5 | 10 | 0 | 24 | 20 |
| N.dot.model | 2 | 5 | 0 | 11 | 6 |
| model | description | WAIC | N.total.est |
|---|---|---|---|
| fm7 | counts | 3.889332 | 108 |
| fm4 | lure + jdt | 358.924599 | 24 |
| fm2 | jdt | 359.814351 | 25 |
| fm6 | lure + jdt + jdtSq | 360.277323 | 24 |
| fm5 | jdt + jdtSq | 360.763399 | 25 |
| fm3 | lure | 368.539468 | 25 |
| fm1 | dot | 370.195910 | 24 |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| p[1] | NA | 8453 | 0.131 | 0.116 | 0.04 | 0.21 | 0 | 1.0009 |
| p[2] | NA | 6013 | 0.074 | 0.062 | 0.03 | 0.12 | 0 | 1.0009 |
| p[3] | NA | 10000 | 0.488 | 0.272 | 0.00 | 0.88 | 0 | 0.9843 |
| p[4] | NA | 6132 | 0.060 | 0.055 | 0.03 | 0.09 | 0 | 1.001 |
| p[5] | NA | 7934 | 0.127 | 0.124 | 0.08 | 0.17 | 0 | 1.001 |
| lambda[1] | NA | 8919 | 0.123 | 0.066 | 0.01 | 0.24 | 0 | 0.9932 |
| lambda[2] | NA | 4129 | 0.243 | 0.169 | 0.05 | 0.41 | 0 | 1.001 |
| lambda[3] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 5803 | 0.503 | 0.423 | 0.22 | 0.76 | 0 | 1.001 |
| lambda[5] | NA | 10000 | 0.273 | 0.226 | 0.09 | 0.44 | 0 | 1.001 |
| N[121] | NA | 10092 | 0.033 | err | 0.00 | 0.00 | err | err |
| N[63] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[107] | NA | 9373 | 0.004 | err | 0.00 | 0.00 | err | err |
| N[39] | NA | 8014 | 0.073 | err | 0.00 | 0.00 | err | err |
| N[88] | NA | 9187 | 0.085 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | jdt | 8406 | 0.448 | 0.439 | 0.22 | 0.67 | 0.00618 | 1.0004 |
| alpha0 | NA | 6449 | -2.611 | -2.607 | -2.93 | -2.29 | 0 | 1.001 |
| lambda[1] | NA | 10000 | 0.127 | 0.07 | 0.01 | 0.24 | 0 | 0.9939 |
| lambda[2] | NA | 10000 | 0.222 | 0.17 | 0.06 | 0.37 | 0 | 1.0008 |
| lambda[3] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 10648 | 0.417 | 0.391 | 0.20 | 0.62 | 0 | 1.001 |
| lambda[5] | NA | 9240 | 0.359 | 0.294 | 0.13 | 0.57 | 0 | 1.001 |
| N[105] | NA | 9473 | 0.029 | err | 0.00 | 0.00 | err | err |
| N[83] | NA | 10107 | 0.079 | err | 0.00 | 0.00 | err | err |
| N[107] | NA | 9739 | 0.028 | err | 0.00 | 0.00 | err | err |
| N[101] | NA | 8248 | 0.012 | err | 0.00 | 0.00 | err | err |
| N[119] | NA | 10000 | 0.108 | err | 0.00 | 0.00 | err | err |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | lure | 10175 | -0.113 | -0.095 | -0.36 | 0.11 | 0.76814 | 0.7752 |
| alpha0 | NA | 7183 | -2.463 | -2.45 | -2.75 | -2.17 | 0 | 1.001 |
| lambda[1] | NA | 10000 | 0.131 | 0.073 | 0.01 | 0.25 | 0 | 0.9939 |
| lambda[2] | NA | 10000 | 0.206 | 0.151 | 0.05 | 0.34 | 0 | 1.0009 |
| lambda[3] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 9188 | 0.413 | 0.373 | 0.19 | 0.61 | 0 | 1.001 |
| lambda[5] | NA | 9146 | 0.330 | 0.266 | 0.12 | 0.53 | 0 | 1.001 |
| N[76] | NA | 9698 | 0.078 | err | 0.00 | 0.00 | err | err |
| N[55] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[58] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[2] | NA | 10000 | 0.021 | err | 0.00 | 0.00 | err | err |
| N[100] | NA | 9782 | 0.015 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | lureDays | 6528 | -0.409 | -0.421 | -0.68 | -0.13 | 0.0605 | 0.9947 |
| alpha[2] | julianDt | 5904 | 0.615 | 0.608 | 0.35 | 0.86 | 0 | 1.001 |
| alpha0 | NA | 4550 | -2.709 | -2.705 | -3.07 | -2.35 | 0 | 1.001 |
| lambda[1] | NA | 9103 | 0.117 | 0.061 | 0.01 | 0.23 | 0 | 0.9943 |
| lambda[2] | NA | 9644 | 0.204 | 0.159 | 0.05 | 0.34 | 0 | 1.0008 |
| lambda[3] | NA | 9247 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 8955 | 0.428 | 0.402 | 0.21 | 0.64 | 0 | 1.001 |
| lambda[5] | NA | 5738 | 0.473 | 0.366 | 0.16 | 0.77 | 0 | 1.001 |
| N[34] | NA | 10000 | 0.019 | err | 0.00 | 0.00 | err | err |
| N[125] | NA | 10000 | 0.452 | 0 | 0.00 | 1.00 | 1 | err |
| N[36] | NA | 9284 | 0.021 | err | 0.00 | 0.00 | err | err |
| N[105] | NA | 8658 | 0.105 | err | 0.00 | 0.00 | err | err |
| N[14] | NA | 8077 | 0.009 | err | 0.00 | 0.00 | err | err |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | julianDt | 2240 | 0.212 | 0.193 | -0.21 | 0.64 | 0.78346 | 0.7802 |
| alpha[2] | julianDtSq | 2197 | 0.238 | 0.253 | -0.14 | 0.60 | 0.61391 | 0.8431 |
| alpha0 | NA | 7177 | -2.659 | -2.633 | -2.97 | -2.32 | 0 | 1.001 |
| lambda[1] | NA | 9696 | 0.136 | 0.072 | 0.01 | 0.26 | 0 | 0.9934 |
| lambda[2] | NA | 10650 | 0.218 | 0.169 | 0.06 | 0.37 | 0 | 1.0008 |
| lambda[3] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 10175 | 0.413 | 0.376 | 0.20 | 0.61 | 0 | 1.001 |
| lambda[5] | NA | 8986 | 0.370 | 0.302 | 0.14 | 0.59 | 0 | 1.001 |
| N[51] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[18] | NA | 10022 | 0.020 | err | 0.00 | 0.00 | err | err |
| N[108] | NA | 10000 | 0.021 | err | 0.00 | 0.00 | err | err |
| N[31] | NA | 10000 | 0.014 | err | 0.00 | 0.00 | err | err |
| N[59] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | lureDays | 6082 | -0.402 | -0.384 | -0.68 | -0.11 | 0.06838 | 0.9913 |
| alpha[2] | julianDt | 2289 | 0.434 | 0.349 | -0.04 | 0.87 | 0.31698 | 0.9382 |
| alpha[3] | julianDtSq | 2288 | 0.186 | 0.216 | -0.20 | 0.55 | 0.71535 | 0.7844 |
| alpha0 | NA | 4530 | -2.749 | -2.738 | -3.11 | -2.37 | 0 | 1.001 |
| lambda[1] | NA | 10000 | 0.123 | 0.075 | 0.00 | 0.23 | 0 | 0.994 |
| lambda[2] | NA | 9588 | 0.203 | 0.149 | 0.05 | 0.34 | 0 | 1.0008 |
| lambda[3] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 8890 | 0.422 | 0.368 | 0.20 | 0.62 | 0 | 1.001 |
| lambda[5] | NA | 5724 | 0.484 | 0.355 | 0.16 | 0.78 | 0 | 1.001 |
| N[97] | NA | 10000 | 0.015 | err | 0.00 | 0.00 | err | err |
| N[12] | NA | 9555 | 0.009 | err | 0.00 | 0.00 | err | err |
| N[70] | NA | 10000 | 0.234 | err | 0.00 | 1.00 | err | err |
| N[49] | NA | 10000 | 0.007 | err | 0.00 | 0.00 | err | err |
| N[43] | NA | 10000 | 0.004 | err | 0.00 | 0.00 | err | err |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | counts | 8863 | 6.601 | 5.766 | 4.57 | 8.64 | 0 | 1.001 |
| alpha0 | NA | 9717 | -7.644 | -7.406 | -9.21 | -5.96 | 0 | 1.001 |
| lambda[1] | NA | 4197 | 0.915 | 0.518 | 0.04 | 1.75 | 0 | 0.9931 |
| lambda[2] | NA | 4909 | 0.921 | 0.647 | 0.22 | 1.59 | 0 | 1.0007 |
| lambda[3] | NA | 1580 | 0.006 | err | 0.00 | 0.00 | err | err |
| lambda[4] | NA | 8177 | 0.974 | 0.91 | 0.46 | 1.46 | 0 | 1.001 |
| lambda[5] | NA | 6460 | 0.940 | 0.757 | 0.30 | 1.56 | 0 | 1.0009 |
| N[56] | NA | 1703 | 0.005 | err | 0.00 | 0.00 | err | err |
| N[15] | NA | 7057 | 0.905 | 0 | 0.00 | 2.00 | 1 | err |
| N[27] | NA | 0 | 1.000 | err | 1.00 | 1.00 | err | err |
| N[35] | NA | 7512 | 0.884 | 0 | 0.00 | 2.00 | 1 | err |
| N[117] | NA | 9099 | 0.914 | 0 | 0.00 | 2.00 | 1 | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).